PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g003880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 334aa    MW: 36175.8 Da    PI: 5.6151
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g003880.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-05306329123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     + C+ C+++F++ + L++H +  H
  Csa20g003880.1 306 FGCNSCSRTFTSEMGLQSHTKAkH 329
                     56*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.845306333IPR007087Zinc finger, C2H2
PROSITE patternPS000280308329IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
GPFNFIRPRT ALERRIALEP SSSSSHRRLQ AHTTSHDNGV LGLLDSMSRG FGVEVKPNAP  60
LRVNPGEDML VHISQAALGE SKNNVKEPIQ LFVKVVGGEK LIIGNLSHDK FPQLSTELVL  120
EKDFDLSHNW KNGSVFFTGY KVDASDPYPL YYFNICLLYL LKPYKLASDD DDEPAVASDK  180
AEPAVAASGV KQVNFQLPNA EVKAQEDDDE DDSEEDSSDD EEESSDESGD EEPEESKKRS  240
AEANSSKNTA SNKKAKFVTP QKTESKKPHV HIATPHPSKQ AGKNSGGSSN GESSKKQQTP  300
KSAGAFGCNS CSRTFTSEMG LQSHTKAKHS AAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2557121e-116AF255712.1 Arabidopsis thaliana putative histone deacetylase HD2c mRNA, complete cds.
GenBankAF3728891e-116AF372889.1 Arabidopsis thaliana AT5g03740/F17C15_160 mRNA, complete cds.
GenBankAF5101681e-116AF510168.1 Arabidopsis thaliana HDT3 mRNA, complete cds.
GenBankAY1420391e-116AY142039.1 Arabidopsis thaliana At5g03740/F17C15_160 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490865.11e-145PREDICTED: histone deacetylase HDT3-like
SwissprotQ9LZR51e-113HDT3_ARATH; Histone deacetylase HDT3
TrEMBLR0GWD31e-112R0GWD3_9BRAS; Uncharacterized protein
STRINGAT5G03740.11e-111(Arabidopsis thaliana)
STRINGfgenesh1_pg.C_scaffold_60002491e-111(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-52histone deacetylase 2C